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View Structure Prediction Details

Protein: CE29351
Organism: Caenorhabditis elegans
Length: 799 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29351.

Description E-value Query
Range
Subject
Range
gi|157760105 - gi|157760105|ref|XP_001672395.1| Hypothetical protein CBG01520 [Caenorhabditis briggsae AF16]
gi|187038162, gi... - gi|39581606|emb|CAE58391.1| Hypothetical protein CBG01520 [Caenorhabditis briggsae], gi|187038162|em...
763.0 [0..3] [796..1]

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Predicted Domain #1
Region A:
Residues: [1-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAMESPNE SEDVSKTFFK LCDGLRLGEL VTTEHFRLSD VMSAIELGEP KMDVGVGSKH  60
   61 IKTLKEAISG GLYADDYPFQ LAIMDSTLAM VVAWLEGSAL GSTVWTNVLL SNVTFVKHPV 120
  121 FHPFASGVNL FIRNAHALIN SVGNLEELPE DFNPQMLFSH QRWAPRRVVV QLMREQVTLL 180
  181 GTTGRKWRES AFSKQAYDIC CAVASRLEMF IMLLEIIGLL VAPEIEDP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.337242
Match: PF04112.4
Description: No description for PF04112.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [229-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFDHKVHLGD FYVHEKEYEG AEENSDEKSE ESTSDPTPSS EAKSETTEKK EQKSNDEATD  60
   61 ETDQNDDENV GDDEDEDDMK QFK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [312-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNFGFASILA ERLCKVTKAY AETVKLGRRA PDNIDGDGDY LWLGAYEPKT CIRMIPACFP  60
   61 RKIKVPSRQE AADWWVKCAE RIYHLCIVTP KTSKDLNYLF YFARTFGQNA CVFTRSLLQI 120
  121 CMFPVDNHLC GDENRSIADA VEYSLSNCFC PQILDRVSPV YKDQTAQSLY VLFLNHMSKL 180
  181 AITVYGSFGC NLSRQRDRLE MAIEDLGQIH SYAGRLEERT DEVLLSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [539-632]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMVTAKEQNY SYHSVATFVF HNLLAIINHY FELGFRMDLY VPYEFPYIYW FIGSVQAHWM  60
   61 RTTLERSQEI QLNVYQANPL RETKNKKLWE ERCK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [633-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGEELKRRVA AHQFSVLNQI AISMISDGVV RLTVVLIRKG IIKMPKGGDD AEKLRFERRF  60
   61 EPFDSLGPPV RVDYERFKSD SGIDQMYEDK IETLIDQAQK SFNEAREHLE KIDNSVEQNR 120
  121 EMMQLIHVAK SNIIACRVLK LDLTDRNVVW SFSEEIPMFP CLKISKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle