YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE30073
Organism: Caenorhabditis elegans
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30073.

Description E-value Query
Range
Subject
Range
gi|7498564 - gi|7498564|pir||T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans
331.0 [0..1] [317..597]

Back

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIKDDHDDA GSQSEDNGVP IYDSLESLLF IPRSMSKELS ETALRTQFLL DKWSNNRRKI  60
   61 VRQMEGIAEK LDNWEKGCAI STAVGSTVGI ASGIAVIGGL ILMPPVAIAG LIVGTASGVS 120
  121 NLATGITKFF HTKGQHKEVA AMIAEDGVLF EELLKSREEL MEA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRKIVEDEEF FKHFKNDGDI ENKLKTVFGG SVTGITGIGT RFAITSMGRL SSSLVKGVLH  60
   61 SVAVIGIVLD SVTLALSAKT LGEGSVSELG SSILEASSKM EMMRQKVVKH FLNEDVWKDD 120
  121 DDVLSDVGSI EMVQPESPNQ SLIMDPHQQE SSVQH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle