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View Structure Prediction Details

Protein: CE30303
Organism: Caenorhabditis elegans
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30303.

Description E-value Query
Range
Subject
Range
gi|39590600, gi|... - gi|39590600|emb|CAE64970.1| Hypothetical protein CBG09804 [Caenorhabditis briggsae], gi|187031294|em...
gi|157774071 - gi|157774071|ref|XP_001665101.1| hypothetical protein CBG09804 [Caenorhabditis briggsae AF16]
257.0 [0..1] [226..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLLLILSF CIGLMHCCSQ SGGCCKRRTP PPVSCGGNQC QQGYACGQYG CARRKAFGSL  60
   61 TKRIDGVLVN DETHEQAELA EASVALRPEK TSQHLSVD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLTNPNFIFR SCCEARGLPD SCLQLCHFNT YTFTTIEAMF NKVHKCPIEA INEIHYCAAQ  60
   61 GLDHRECCET SGITTTVAGR KCLSFCDQRP NRFTPIDASY LPCYEVFEGM KQCFYSEIKR 120
  121 RAQKKFPGSD KFDYALSLH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.721246
Match: PF01682.10
Description: No description for PF01682.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle