YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE31917
Organism: Caenorhabditis elegans
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31917.

Description E-value Query
Range
Subject
Range
gi|39593365, gi|... - gi|39593365|emb|CAE64835.1| Hypothetical protein CBG09631 [Caenorhabditis briggsae], gi|187031681|em...
gi|157763260 - gi|157763260|ref|XP_001673972.1| Hypothetical protein CBG09631 [Caenorhabditis briggsae AF16]
181.0 [0..45] [189..1]

Back

Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICFRTAFIL ILGVVIGTTA KRHNVRRHVN GKWTDKHCEE PPSLKEDLAT WMQISMSGQF  60
   61 DDTALEEWST NGKEPEICEK SPKADGVTTI MERALCPWDS RVNYQESREP KLIAESVCLC 120
  121 RKSRGSTGAF CMPIVRKVPI LRRVSCDRST GLWNYVRSTE LITVGCHSVL PRTQRAARLA 180
  181 HLSSSRIIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 1jpyA
Description: Interleukin 17F, IL-17F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.587687438033265 bayes_pls_golite062009
protein binding 0.53742562922963 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle