| Protein: | skn-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 533 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MYTDSNNRNF DEVNHQHQQE QDFNGQSKYD YPQFNRPMGL RWRDDQRMME YFMSNGPVET 60
61 VPVMPILTEH PPASPFGRGP STERPTTSSR YEY
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [94-248] |
1 11 21 31 41 51
| | | | | |
1 SSPSLEDIDL IDVLWRSDIA GEKGTRQVAP ADQYECDLQT LTEKSTVAPL TAEENARYED 60
61 LSKGFYNGFF ESFNNNQYQQ KHQQQQREQI KTPTLEHPTQ KAELEDDLFD EDLAQLFEDV 120
121 SREEGQLNQL FDNKQQHPVI NNVSLSEGIV YNQAN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [249-449] |
1 11 21 31 41 51
| | | | | |
1 LTEMQEMRDS CNQVSISTIP TTSTAQPETL FNVTDSQTVE QWLPTEVVPN DVFPTSNYAY 60
61 IGMQNDSLQA VVSNGQIDYD HSYQSTGQTP LSPLIIGSSG RQQQTQTSPG SVTVTATATQ 120
121 SLFDPYHSQR HSFSDCTTDS SSTCSRLSSE SPRYTSESST GTHESRFYGK LAPSSGSRYQ 180
181 RSSSPRSSQS SIKIARVVPL A
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [450-533] |
1 11 21 31 41 51
| | | | | |
1 SGQRKRGRQS KDEQLASDNE LPVSAFQISE MSLSELQQVL KNESLSEYQR QLIRKIRRRG 60
61 KNKVAARTCR QRRTDRHDKM SHYI
|
| Detection Method: | |
| Confidence: | 19.221849 |
| Match: | 1sknP |
| Description: | Skn-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56528092116191 | bayes_pls_golite062009 |
| DNA binding | 4.39236205038451 | bayes_pls_golite062009 |
| nucleic acid binding | 4.27517034548789 | bayes_pls_golite062009 |
| transcription factor activity | 3.86034396858961 | bayes_pls_golite062009 |
| binding | 3.28937567198027 | bayes_pls_golite062009 |
| protein binding | 2.82801305666365 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.80824533696213 | bayes_pls_golite062009 |
| transcription activator activity | 2.80670414213103 | bayes_pls_golite062009 |
| protein heterodimerization activity | 1.87549895714075 | bayes_pls_golite062009 |
| protein dimerization activity | 1.4553301455216 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.12585390480455 | bayes_pls_golite062009 |
| transcription factor binding | 0.495155180229128 | bayes_pls_golite062009 |
