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View Structure Prediction Details

Protein: seu-1
Organism: Caenorhabditis elegans
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for seu-1.

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
179.0 [0..1] [390..185]

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Predicted Domain #1
Region A:
Residues: [1-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYSTDVSVS RHSENRRKSS SDVSRRHGDK EKRDRKREDV KKKSNGERSS SSGRRREEDH  60
   61 KRKSESSRKE KKDEDVKEKV VDENKVEDEA VEMQGLVEVD CCEEEETIEQ AKEHGSDEPE 120
  121 RPESHQSAHS AAVSNASHHS DSEEELDYEE DDIDVDLDGD IDVETMKMAA RGDLKVDDTT 180
  181 DEDEINDVKD ETMEEQKEDG EPEKKKPRTS ENDDKDKKHH GSSSSNSHRR REDDKDRRQS 240
  241 SDHHKERRRS PATRQRATDH KESRRSEGTS TRVESAASAA APPPPPSSSS SSKRSHEAAA 300
  301 RIRAPSPPRR SFGDRGNRSD EHHGGSRHMD VGPQRRRLQD HRVRDDGRRV SSFEDRKRPE 360
  361 RGFQDSGRRR RPSPPRGRPG EKVVQSYRNG V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle