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View Structure Prediction Details

Protein: CE32055
Organism: Caenorhabditis elegans
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32055.

Description E-value Query
Range
Subject
Range
gi|39596981, gi|... - gi|39596981|emb|CAE59208.1| Hypothetical protein CBG02521 [Caenorhabditis briggsae], gi|187037341|em...
gi|157751940 - gi|157751940|ref|XP_001679682.1| Hypothetical protein CBG02521 [Caenorhabditis briggsae AF16]
511.0 [0..1] [506..1]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSKIRYQLL DPSAAPKTFK FIWILLFLAV CFVAYYLWIF NPKKGIYDPL TTDKQNPMTY  60
   61 EQVVNDLRNE IDQRNAIISE LQKDFVKMEL KTEFKAIYPR R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PETDHIDCGR ILADDKVYLQ TVSGKDRVKI VENKNLNMSC SAIMNRILPS GNDLKPLKNG  60
   61 VAFARIVYTD YEMIEKQVQM SYHPQNSFCF AIDKKAPSQF HERLRAMAAC LPNVLLLPDE 120
  121 ESVDSAGHNI NLAHYNCLRV LINKPGWNYA ILLQNHDVIV KSVYEIEQIY DWLGGANDIE 180
  181 ITPEAGRVDN KKFKWDPVSL KMFRNETGID KNVLTTSMKF AKGAVQGSLS RGAVDWMVRT 240
  241 VDLSTYINQW NEGSSGVDEQ FIQSFQVSAD LGMPGHFTDE CLKQKRNTDF VSRMSQWMYG 300
  301 SAHKCGSKTV RHAICLLGIE DLRTVAAYPN LMFNKMIPAF DYSIVECTAE LLYNRTFLGQ 360
  361 VDHPLEENYY AQMVNVLYHK NHLEPNYKLE CKPSYTRWAE REYPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 2gakA
Description: No description for 2gakA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle