Protein: | lir-1 |
Organism: | Caenorhabditis elegans |
Length: | 251 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lir-1.
Description | E-value | Query Range |
Subject Range |
|
369.0 | [0..11] | [251..2574] |
Region A: Residues: [1-80] |
1 11 21 31 41 51 | | | | | | 1 MPKFVVIELN DDAATIDLLS YCVKKNFERV SLLTRLEDHP YLRDDQDVVQ DDTQSQGTDG 60 61 MLLQLNDEER QRLMKMISTP |
Detection Method: | ![]() |
Confidence: | 15.0 |
Match: | 1tf6A |
Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
binding | 0.414217765611205 | bayes_pls_golite062009 |
Region A: Residues: [81-251] |
1 11 21 31 41 51 | | | | | | 1 GPQTLSMERI QMAPGQGQHI LQQHQIPSTS SYTNNSFIYI KSDPQYKDEP QQQSNQFDAT 60 61 VNSVAHGQAG LSTLEMFACN GSPNGGDVLR RKTPSRKAED SIKATCKVCG HDVMYSPQRT 120 121 WNLMRHVWIM HQSSKPNQCS ICGYSHIKPY VRKHIESQHK HDSNATIIDL K |
Detection Method: | ![]() |
Confidence: | 49.69897 |
Match: | 2i13A |
Description: | No description for 2i13A was found. |