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View Structure Prediction Details

Protein: tnt-4
Organism: Caenorhabditis elegans
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tnt-4.

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
141.0 [0..2] [308..222]

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Predicted Domain #1
Region A:
Residues: [1-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEEYSEYE DEEVEEEEVE EVEEAEAEEE EDTEQQEEES GEALNEGEKA MLAAKRRHEN  60
   61 DEQAKLEDYE KARRSEREKE EEELEKLKEK QAQRKLAREQ EEREAAERKR LDEERRQKEE 120
  121 QERRARAEEE KKRKEEEKLK KAQMMGGGFP GQQGGRNFVI QKKEESAGVG DRFGNIVQAK 180
  181 QEMGMTKEQQ EEAKSVAMAG IRKSIAEAST ILPNDMKAKI KELHQRICKL EAQKYDLEKR 240
  241 HERQEYDLKE LNERSRQVAR ANNAKNGQVS GDDTGGRHPP KVQISSKYDR QIDRRNFKER 300
  301 RQVYENVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle