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View Structure Prediction Details

Protein: ckk-1
Organism: Caenorhabditis elegans
Length: 432 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ckk-1.

Description E-value Query
Range
Subject
Range
gi|73760545 - gi|73760545|gb|AAZ82849.1| Cam kinase kinase protein 1, isoform b [Caenorhabditis elegans]
336.0 [0..4] [432..84]

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Predicted Domain #1
Region A:
Residues: [1-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTFQSVSQQ RSESYIQLNQ YRLMEEIGQG SYGIVKLAYN EEDKNLYALK VLDKMKLLKN  60
   61 FACFRQPPPR RNKENAAPSV LRNPLQLVQK EIAILKKLSH PNVVKLVEVL DDPNDNYLYM 120
  121 VFEFVEKGSI LEIPTDKPLD EDTAWSYFRD TLCGLEYLHY QKIVHRDIKP SNLLLSDIGQ 180
  181 VKIADFGVSC EFEGIDAFLS GTAGTPAFMA PEALTEGANH FYSGRAQDIW SLGITLYAFV 240
  241 IGTVPFVDNY IIALHKKIKN DPIVFPEAPI LSEALQDIIL GMLKKDPGHR LMLHEVKVHT 300
  301 WVTRDGTVPM SSEQENCHLV TVTEEEIENC VRVIPRLDTL ILVKAMGHRK RFGNPFRNKL 360
  361 SAQSSIRDRR KSSSVKDPTY VPPPNSPPAT SNNNLNSTKV DRPEIKCIEM NLSGLTLKVD 420
  421 EAMQSKVESA RQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.221849
Match: 2esmA
Description: Crystal Structure of ROCK 1 bound to fasudil
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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