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View Structure Prediction Details

Protein: grd-13
Organism: Caenorhabditis elegans
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-13.

Description E-value Query
Range
Subject
Range
gi|39583837 - gi|39583837|emb|CAE74910.1| Hypothetical protein CBG22788 [Caenorhabditis briggsae]
gi|157771474 - gi|157771474|ref|XP_001677557.1| Hypothetical protein CBG22788 [Caenorhabditis briggsae AF16]
228.0 [0..1] [154..1]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFLLLTVL VASVLAAYDD LPKPADPYQP PGTEPKTEST CPDPYKKIIT QLRAELGKDV  60
   61 SSIKFTNQLG SRVQKAFGSA HEITMGPSEA TLKTNFNGTI CRHASTDGFH YIVYPTPGQY 120
  121 NINNAAVEEY FEKFAEFAAL GKSANIADLP KDPRNV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.29
Match: 1re6A
Description: Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.505766470116817 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle