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View Structure Prediction Details

Protein: pha-1
Organism: Caenorhabditis elegans
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pha-1.

Description E-value Query
Range
Subject
Range
pha-1 - DNA-binding protein pha-1 status:Confirmed UniProt:Q27242 protein_id:CAA21655.1
604.0 [0..1] [453..1]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPNSSCTI LFENLYDNDL ALKLFNNRTI VDNILRNVKG DINNRLELRL VNKSFNLAAI  60
   61 HVIRKENRTV VFHKFNRCDR LHKISPCPDC SVHLNSVKLN KKNIFQYARF LKQTMKIMVI 120
  121 KIRIEDSKRV CCMITDVHQV IHKSLIGSDY DKVEEFVGID QISFSTCIPC EKIAANCKVF 180
  181 GPVQNDMFNA ILRLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [196-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHYDVLQVKD MRLYKLMILN KEDPTVVEDF INSNITCSKL TIFLMYMYEK EAFGYSLPRE  60
   61 FLDLLIKKWN VKTVEIVPRQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [276-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQPIPYYFHC NTDFIVPKAK FYVDYWTQPR SKYTLDGVEI DLQLTKVVEQ QIKNRKSLFD  60
   61 NFIANARRIF PSNKITVRFS KEVCQEMMSQ GNVEDFISGI ILMTQKDAQP NSHISLKLYP 120
  121 EEVDAPLIDS FLRENFEKKF DSWNLETVSD SSANLPAEKC YQFFNQSTNC KIIFYICC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle