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View Structure Prediction Details

Protein: hog-1
Organism: Caenorhabditis elegans
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hog-1.

Description E-value Query
Range
Subject
Range
gi|5441265 - gi|5441265|dbj|BAA82360.1| sonic hedgehog [Paralichthys olivaceus]
232.0 [0..1] [194..205]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPSGKKRM DQVGIGDLVL TGNLTATYYT PIITWMHREP ENRYNFYTIM TEYGKMLAVS  60
   61 AKHLIYRNLC DENYAEYVKY LPKGRNVVYA EELKVGDCLV LLYKGKFRQQ RVMRISITER 120
  121 KGIYAPITKN GRIIVNDIVA SVFSGIKHTR LQSDYYSTIA YAQSWLWIFG ETVFHKATIP 180
  181 IGSALASDVL RLVIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.30103
Match: 1at0A
Description: 17-KDA FRAGMENT OF HEDGEHOG C-TERMINAL AUTOPROCESSING DOMAIN
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle