| Protein: | gar-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-3.
| Description | E-value | Query Range |
Subject Range |
|
|
332.0 | [0..1] | [611..1] |
|
Region A: Residues: [1-332] |
1 11 21 31 41 51
| | | | | |
1 MQSSSLGNAD DPRFRQTHLF QMLVKVINTS AENATKTAIA TSSTSTPSFV DTYSTSSLLG 60
61 EEGRMVMIVV IGAMFALVTS LGNLMVMVSF KIDKQLQTIS NYFLFSLAVA DIAIGVISIP 120
121 MFTYYTAIQK WDLGYTMCQF WLCIDYLMSN ASVLNLLLIS FDRYFSVTRP LSYRPRRTTK 180
181 KALTMIACTY IISLILWPPW IISWPYIEGK FTAEPGTCVV QFLQTNPYVT VGTAVAAFYL 240
241 PVTIMCILYT RVYWETQKRQ KEFGKLQATQ TWASDVVDRP STQSFRNSKM WKKVKKFSRR 300
301 SMKRDVSSTS IIKSSGSMRK KNNQDGYVED SV
|
| Detection Method: |  |
| Confidence: | 39.39794 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [333-449] |
1 11 21 31 41 51
| | | | | |
1 TPCTSSRNSK RKSWLRNCTG KSNSSSEDSS EAVAMNLDDT SLSSSHFALS GSRRRNISPP 60
61 CTPMPTNFED EEQTDAGASM RNGSARFRSR PSDTGKNNNS DTYTVLIELN DEGSRPS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [450-611] |
1 11 21 31 41 51
| | | | | |
1 VRLSSCEPYL DEPISTRNRS KSDCNSEIDE RRHSLLNKQS PFKNGRILKN FSSQERKSEK 60
61 EQRKNERKQE SKAAKTLSAI LCAFIATWTP YNLIVCWEAF FPNTVPNVLW TFSYFLCYIN 120
121 STINPLCYAL CNARFRHTYM RILRCKFKAE RPTMNQGYVR RN
|
| Detection Method: | |
| Confidence: | 4.03 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
