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View Structure Prediction Details

Protein: CE35824
Organism: Caenorhabditis elegans
Length: 513 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE35824.

Description E-value Query
Range
Subject
Range
CE07759 - status:Confirmed UniProt:O17173 protein_id:AAB70946.1
288.0 [0..212] [513..8]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQEMQQSME LSHEIVIANG HLFGIQGFTC NITLSLEQIG RTYNGVSMAL PFVLLIISAI  60
   61 KKNSLRKDYV ATGDVSLAGA VLTVDYINNK IVGAINAGLK GVVIPAENGK DVKPFLKTQI 120
  121 KVIEVTSIVD AWSTMIIPEM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 1rr9A
Description: Catalytic domain of E.coli Lon protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.348396152404562 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [141-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNGDSGASNC GSLDGVRSVT RKGKTMKTMK SGLPHRNQTD QKNEMTSMGE CIGEVIREDY  60
   61 LVINSSDNCR RPLYKQPCPY PPEELPKPDP ERKMSHTEYL QLSESPKLGV QKIGSKDVLL 120
  121 KKVILNEISK SPAIWNTYKA NGIYSEVAVN VFKRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [296-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLLNIKLIQ SIFKLAKDGL RNRLRDSITE KLHNEADTEN HLWQWELYEF IRFYREITEG  60
   61 WELRMRALVA KKHEGQLRVR ESAECSDMIK DDKNLINIDD ERNMKLDHVR TDISDTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [413-513]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVQTCMDSSR LPSNDEHPGA KPTLIHHTTP SLDCQPTKHE SIHSDFSKEM DQLVNQATRI  60
   61 AREHPERAET LLKALFATVS TFDQEGYVCV EDKKFTEKQS K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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