YRC Public Data Repository - Protein Structure Prediction

Protein:	PTJB_BACSU, PTCB...
Organism:	Bacillus subtilis
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTJB_BACSU, PTCB....

Description	E-value	Query Range	Subject Range
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	146.0	[0..1]	[100..20]
PTEB_GEOSE - Cellobiose-specific phosphotransferase enzyme IIB component OS=Geobacillus stearothermophilus GN=cel...	143.0	[0..1]	[100..1]
gi\|82748072, gi\|... - gi\|82748072\|ref\|ZP_00910562.1\| phosphotransferase system sugar-specific EIIB component [Clostridium ...	142.0	[0..1]	[101..2]
gi\|52787766, gi\|... - gi\|52787766\|ref\|YP_093595.1\| LicB [Bacillus licheniformis ATCC 14580], gi\|52350268\|gb\|AAU42902.1\| Li...	141.0	[0..1]	[99..1]
gi\|89150746, gi\|... - gi\|89201159\|ref\|ZP_01179905.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [B...	141.0	[0..1]	[100..1]
gi\|47553317, gi\|... - gi\|47570018\|ref\|ZP_00240680.1\| PTS system, IIB component [Bacillus cereus G9241], gi\|47569712\|ref\|ZP...	141.0	[0..1]	[99..1]
gi\|229351162, gi... - gi\|229511197\|ref\|ZP_04400676.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae B33], ... gi\|197751953, gi... - gi\|254286620\|ref\|ZP_04961576.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae AM-19... gi\|153819913, gi... - gi\|153819913\|ref\|ZP_01972580.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae NCTC ... gi\|149739622, gi... - gi\|153826610\|ref\|ZP_01979277.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-2... gi\|227013198, gi... - gi\|227117748\|ref\|YP_002819644.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O395... gi\|229608151, gi... - gi\|229608151\|ref\|YP_002878799.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae MJ-12... gi\|229521394, gi... - gi\|229521394\|ref\|ZP_04410813.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TM 110... gi\|121586554, gi... - gi\|121586554\|ref\|ZP_01676340.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 2740-... gi\|153212248, gi... - gi\|153212248\|ref\|ZP_01948036.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 1587]... gi\|121728832, gi... - gi\|121728832\|ref\|ZP_01681843.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V52],... gi\|153801322, gi... - gi\|153801322\|ref\|ZP_01955908.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-3... gi\|229518316, gi... - gi\|229518316\|ref\|ZP_04407760.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae RC9], ... gi\|9655767, gi\|1... - gi\|9655767\|gb\|AAF94440.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O1 biovar E... gi\|153222947, gi... - gi\|153222947\|ref\|ZP_01953554.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MAK 7... gi\|229347426, gi... - gi\|229515657\|ref\|ZP_04405116.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TMA 21... gi\|11280254 - pir\|\|D82219 PTS system, cellobiose-specific IIB component VC1281 [imported] - Vibrio cholerae (strai... gi\|125620828, gi... - gi\|254226659\|ref\|ZP_04920238.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V51],... gi\|229505132, gi... - gi\|229505132\|ref\|ZP_04394642.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae BX 330... gi\|254844110, gi... - gi\|254848405\|ref\|ZP_05237755.1\| PTS system protein [Vibrio cholerae MO10], gi\|254844110\|gb\|EET22524.... gi\|227009341, gi... - gi\|227081453\|ref\|YP_002810004.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae M66-...	140.0	[0..2]	[100..3]
gi\|227817974, gi... - gi\|227817974\|ref\|YP_002817983.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|196033130, gi... - gi\|196033130\|ref\|ZP_03100543.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus W], g... gi\|218539017, gi... - gi\|218906391\|ref\|YP_002454225.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus AH82... gi\|172081764, gi... - gi\|177652989\|ref\|ZP_02935316.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254735566, gi... - gi\|254737018\|ref\|ZP_05194723.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|190567812, gi... - gi\|190567812\|ref\|ZP_03020724.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis Ts... gi\|254724360 - gi\|254724360\|ref\|ZP_05186144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170687931, gi... - gi\|170687931\|ref\|ZP_02879144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254686362 - gi\|254686362\|ref\|ZP_05150221.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170707742, gi... - gi\|170707742\|ref\|ZP_02898193.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|229599987, gi... - gi\|229599987\|ref\|YP_002869434.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|167635304, gi... - gi\|167635304\|ref\|ZP_02393619.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|167640483, gi... - gi\|167640483\|ref\|ZP_02398746.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254757099 - gi\|254757099\|ref\|ZP_05209127.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254755644 - gi\|254755644\|ref\|ZP_05207677.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|164714397, gi... - gi\|165870074\|ref\|ZP_02214731.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254744345 - gi\|254744345\|ref\|ZP_05202025.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|30265240, gi\|... - gi\|30265240\|ref\|NP_847617.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|21397677 - ref\|NP_653662.1\| PTS_IIB, PTS system, Lactose/Cellobiose specific IIB subunit [Bacillus anthracis st... gi\|49481197, gi\|... - gi\|49481197\|ref\|YP_039205.1\| PTS system, cellobiose-specific IIB subunit [Bacillus thuringiensis ser... gi\|49181977, gi\|... - gi\|49188050\|ref\|YP_031303.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|47505911, gi\|... - gi\|47530763\|ref\|YP_022112.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ...	140.0	[0..1]	[99..1]
gi\|126701275, gi... - gi\|126701275\|ref\|YP_001090172.1\| PTS system, IIB component [Clostridium difficile 630], gi\|115252712... gi\|119633630, gi... - gi\|145952481\|ref\|ZP_01801491.1\| hypothetical protein CdifQ_04004232 [Clostridium difficile QCD-32g58... gi\|255652235 - gi\|255652235\|ref\|ZP_05399137.1\| PTS system, IIB component [Clostridium difficile QCD-37x79] gi\|255102865 - gi\|255102865\|ref\|ZP_05331842.1\| PTS system, IIB component [Clostridium difficile QCD-63q42] gi\|255308685 - gi\|255308685\|ref\|ZP_05352856.1\| PTS system, IIB component [Clostridium difficile ATCC 43255] gi\|255316392 - gi\|255316392\|ref\|ZP_05357975.1\| PTS system, IIB component [Clostridium difficile QCD-76w55] gi\|255519051 - gi\|255519051\|ref\|ZP_05386727.1\| PTS system, IIB component [Clostridium difficile QCD-97b34] gi\|254977308 - gi\|254977308\|ref\|ZP_05273780.1\| PTS system, IIB component [Clostridium difficile QCD-66c26] gi\|255094639 - gi\|255094639\|ref\|ZP_05324117.1\| PTS system, IIB component [Clostridium difficile CIP 107932]	140.0	[0..1]	[100..2]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILLVCAAG MSTSLLVSKM EKSAQEQGKD YTIWAVSGDS VQNHIDKADV LLLGPQVRYM  60
   61 LPQLKKLGES KGVPVDVINT VHYGTCNGAE VLKSAEQLGH VS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits