YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRR_BACSU
Organism:	Bacillus subtilis
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRR_BACSU.

Description	E-value	Query Range	Subject Range
gi\|228748330, gi... - gi\|229013076\|ref\|ZP_04170241.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides DSM 2048], gi\|... PYRR_BACWK - Bifunctional protein PyrR OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrR PE=3 SV=1 gi\|228648747, gi... - gi\|229134701\|ref\|ZP_04263510.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-ST196], gi\|... gi\|228717731, gi... - gi\|229061497\|ref\|ZP_04198841.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH603], gi\|22871... gi\|228614788, gi... - gi\|229168632\|ref\|ZP_04296354.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH621], gi\|22861... gi\|228620709, gi... - gi\|229162827\|ref\|ZP_04290784.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus R309803], gi\|228...	146.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQKAVILDE QAIRRALTRI AHEMIERNKG MNNCILVGIK TRGIYLAKRL AERIEQIEGN  60
   61 PVTVGEIDIT LYRDDLSKKT SNDEPLVKGA DIPVDITDQK VILVDDVLYT GRTVRAGMDA 120
  121 LVDVGRPSSI QLAVLVDRGH RELPIRADYI GKNIPTSKSE KVMVQLDEVD QNDLVAIYEN 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1a3cA
Description:	PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, DIMERIC FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	4.2311942024575	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	4.16478627082997	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.87924736622135	bayes_pls_golite062009
catalytic activity	2.67475805095976	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	2.55041201441853	bayes_pls_golite062009
transferase activity	2.23444207913717	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	1.74456227958952	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.7212298503296	bayes_pls_golite062009
diphosphotransferase activity	1.16607700772697	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.14461122399598	bayes_pls_golite062009
transcription regulator activity	0.638819926590526	bayes_pls_golite062009
nucleic acid binding	0.365716008829981	bayes_pls_golite062009
DNA binding	0.197909920189603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: