YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YKQC_BACSU, RNJ1...
Organism: Bacillus subtilis
Length: 555 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKQC_BACSU, RNJ1....

Description E-value Query
Range
Subject
Range
gi|89085995, gi|... - gi|89099386|ref|ZP_01172263.1| hypothetical protein B14911_22447 [Bacillus sp. NRRL B-14911], gi|890...
546.0 [0..1] [555..1]

Back

Predicted Domain #1
Region A:
Residues: [1-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVKNDQTA VFALGGLGEI GKNTYAVQFQ DEIVLIDAGI KFPEDELLGI DYVIPDYTYL  60
   61 VKNEDKIKGL FITHGHEDHI GGIPYLLRQV NIPVYGGKLA IGLLRNKLEE HGLLRQTKLN 120
  121 IIGEDDIVKF RKTAVSFFRT THSIPDSYGI VVKTPPGNIV HTGDFKFDFT PVGEPANLTK 180
  181 MAEIGKEGVL CLLSDSTNSE NPEFTMSERR VGESIHDIFR KVDGRIIFAT FASNIHRLQQ 240
  241 VIEAAVQNGR KVAVFGRSME SAIEIGQTLG YINCPKNTFI EHNEINRMPA NKVTILCTGS 300
  301 QGEPMAALSR IANGTHRQIS INPGDTVVFS SSPIPGNTIS VSRTINQLYR AGAEVIHGPL 360
  361 NDIHTSGHGG QEEQKLMLRL IKPKFFMPIH GEYRMQKMHV KLATDCGIPE ENCFIMDNGE 420
  421 VLALKGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 2i7tA
Description: No description for 2i7tA was found.

Predicted Domain #2
Region A:
Residues: [428-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EASVAGKIPS GSVYIDGSGI GDIGNIVLRD RRILSEEGLV IVVVSIDMDD FKISAGPDLI  60
   61 SRGFVYMRES GDLINDAQEL ISNHLQKVME RKTTQWSEIK NEITDTLAPF LYEKTKRRPM 120
  121 ILPIIMEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle