YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CTR1_ARATH
Organism: Arabidopsis thaliana
Length: 821 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for CTR1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMPGRRSNY TLLSQFSDDQ VSVSVTGAPP PHYDSLSSEN RSNHNSGNTG KAKAERGGFD  60
   61 WDPSGGGGGD HRLNNQPNRV GNNMYASSLG LQRQSSGSSF GESSLSGDYY MPTLSAAANE 120
  121 IESVGFPQDD GFRLGFGGGG GDLRIQMAAD SAGGSSSGKS WAQQTEESYQ LQLALALRLS 180
  181 SEATCADDPN FLDPVPDESA LRTSPSSAET VSHRFWVNGC LSYYDKVPDG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FYMMNGLDPY IWTLCIDLHE SGRIPSIESL RAVDSGVDSS LEAIIVDRRS DPAFKELHNR  60
   61 VHDISCSCIT TKEVVDQLAK LICNRMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1rrbA
Description: THE RAS-BINDING DOMAIN OF RAF-1 FROM RAT, NMR, 1 STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [318-821]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVIMGEDEL VPMWKECIDG LKEIFKVVVP IGSLSVGLCR HRALLFKVLA DIIDLPCRIA  60
   61 KGCKYCNRDD AASCLVRFGL DREYLVDLVG KPGHLWEPDS LLNGPSSISI SSPLRFPRPK 120
  121 PVEPAVDFRL LAKQYFSDSQ SLNLVFDPAS DDMGFSMFHR QYDNPGGEND ALAENGGGSL 180
  181 PPSANMPPQN MMRASNQIEA APMNAPPISQ PVPNRANREL GLDGDDMDIP WCDLNIKEKI 240
  241 GAGSFGTVHR AEWHGSDVAV KILMEQDFHA ERVNEFLREV AIMKRLRHPN IVLFMGAVTQ 300
  301 PPNLSIVTEY LSRGSLYRLL HKSGAREQLD ERRRLSMAYD VAKGMNYLHN RNPPIVHRDL 360
  361 KSPNLLVDKK YTVKVCDFGL SRLKASTFLS SKSAAGTPEW MAPEVLRDEP SNEKSDVYSF 420
  421 GVILWELATL QQPWGNLNPA QVVAAVGFKC KRLEIPRNLN PQVAAIIEGC WTNEPWKRPS 480
  481 FATIMDLLRP LIKSAVPPPN RSDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 114.0
Match: 2h8hA
Description: No description for 2h8hA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle