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View Structure Prediction Details

Protein: FLA8_ARATH
Organism: Arabidopsis thaliana
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLA8_ARATH.

Description E-value Query
Range
Subject
Range
gi|21595125 - gi|21595125|gb|AAM66074.1| endosperm-specific protein-like protein [Arabidopsis thaliana]
275.0 [0..1] [420..1]

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Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASQTFSLL AFTFSLLAFA STVSSHNITQ ILADSPDYSS FNSYLSQTKL ADEINSRTTI  60
   61 TVLVLNNGAM SALAGKHPLS VIKSALSLLV LLDYYDPQKL HKISKGTTLS TTLYQTTGNA 120
  121 PGNLGFVNIT DLKGGKVGFG SAASGSKLDS SYTKSVKQIP YNISILEIDA PIIAPGVLTA 180
  181 PAPSASLSNI TGLLEKAGCK TFANLLVSSG VLKTYESAVE KGLTVFAPSD EAFKAEGVPD 240
  241 LTKLTQAEVV SLLEYHALAE YKPKGSLKTN KNNISTLATN GAGKFDLTTS TSGDEVILHT 300
  301 GVAPSRLADT VLDATPVVIF TVDNVLLPAE LFGKSKSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.30103
Match: 1o70A
Description: Fasciclin I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [339-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAPAPEPVT APTPSPADAP SPTAASPPAP PTDESPESAP SDSPTGSANS KSANAAVGVS  60
   61 TPSLFTALVT IAAIAVSVSL CS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.01
Match: 1q1qA
Description: Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle