YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: KNAT5_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KNAT5_ARATH.

Description E-value Query
Range
Subject
Range
gi|4099828 - gi|4099828|gb|AAD00692.1| homeobox transcription factor SKN2 [Picea mariana]
188.0 [0..26] [381..91]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP  60
   61 PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD GETILGVVGG EDWRSASYKA 120
  121 AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FMSHYVVLLC SFKEQLQHHV CVHAMEAITA CWEIEQSLQS LTGVSPSESN GKTMSDDEDD  60
   61 NQVESEVNMF DGSLDGSDCL MGFGPLVPTE RERSLMERVK KELKHELKQG FKEKIVDIRE 120
  121 EIMRKRRAGK LPGDTTSVLK EWWRTHSKWP YPTEEDKAKL VQETGLQLKQ INNWFINQRK 180
  181 RNWNSNSSTS STLTKNKRKR TGKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 2h8rA
Description: No description for 2h8rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle