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View Structure Prediction Details

Protein: IAA28_ARATH
Organism: Arabidopsis thaliana
Length: 175 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IAA28_ARATH.

Description E-value Query
Range
Subject
Range
gi|4887022 - gi|4887022|gb|AAD32147.1|AF123509_1 Nt-iaa4.1 deduced protein [Nicotiana tabacum]
217.0 [0..6] [174..15]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA YNNYQQLSHA VDQLFSKKDS  60
   61 WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 1wj6A
Description: Solution structure of RSGI RUH-024, a PB1 domain in human cDNA, KIAA0049
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle