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View Structure Prediction Details

Protein: LBD29_ARATH
Organism: Arabidopsis thaliana
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD29_ARATH.

Description E-value Query
Range
Subject
Range
LBD17_ARATH - LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1
247.0 [0..6] [218..2]
gi|57999827, gi|... - gi|57999827|dbj|BAD88523.1| LOB domain protein [Oryza sativa Japonica Group], gi|55275373|gb|AAV4950...
223.0 [0..6] [206..2]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL  60
   61 PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN LQAELEILKQ QAAQSMIFAD 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 66.920819
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSENPNSYY GDTTKAPYHH DHQNIYHHHD QTHLVYQTGS SGTVQHGDAT ESSYHNETSS  60
   61 GMGEFSIYSD LEQHLNTFNQ DHLKELQSAN FGYISFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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