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View Structure Prediction Details

Protein: PLY5_ARATH
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLY5_ARATH.

Description E-value Query
Range
Subject
Range
gi|6606532 - gi|6606532|gb|AAF19195.1|AF206319_1 pectate lyase 1 [Musa acuminata]
gi|6606532|gb|AA... - pectate lyase 1 [Musa acuminata]
472.0 [0..3] [408..1]

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Predicted Domain #1
Region A:
Residues: [1-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN  60
   61 PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV VTDSSDKDVV NPKPGTLRHA 120
  121 VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN 180
  181 IHDCKRKGNA YVRDSPSHYG WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST 240
  241 AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300
  301 DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL 360
  361 NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL FCRKGSRC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.221849
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle