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View Structure Prediction Details

Protein: PSBY_ARATH
Organism: Arabidopsis thaliana
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSBY_ARATH.

Description E-value Query
Range
Subject
Range
PSBY_SPIOL - Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2
255.0 [0..9] [187..14]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMATATK CMSLNPSPPK LQNQTKSKPF ISLPTPPKPN VSLAVTSTAL AGAVFSSLSY  60
   61 SEPALAIQQI AQLAAANASS DNRGLALLLP IVPAIAWVLY NILQPAINQV NKMRESKGIV 120
  121 VGLGIGGGLA ASGLLTPPPE AYAAAEAAAA SSDSRGQLLL IVVTPALLWV LYNILQPALN 180
  181 QINKMRSGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.385 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.347 a.118.9 ENTH/VHS domain
View Download 0.331 a.74.1 Cyclin-like
View Download 0.322 a.24.16 Nucleotidyltransferase substrate binding subunit/domain
View Download 0.297 d.227.1 OsmC-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle