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View Structure Prediction Details

Protein: PYRB_ARATH
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRB_ARATH.

Description E-value Query
Range
Subject
Range
gi|443820, gi|10... - gi|443820|emb|CAA50687.1| aspartate carbamoyltransferase [Arabidopsis thaliana], pir||S46441 asparta...
448.0 [0..1] [390..1]

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Predicted Domain #1
Region A:
Residues: [1-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIASSLTSA TLCGASVFPK ALACSSEFPI NLPSPFESSK ICLTSFPASR DLKKNATLNL  60
   61 TRNVGPVRCH AMQAGTRELK KFELSDVIEG KQFDREMLSA IFDVAREMEK IEKSSSQSEI 120
  121 LKGYLMATLF YEPSTRTRLS FESAMKRLGG EVLTTENARE FSSAAKGETL EDTIRTVEGY 180
  181 SDIIVMRHFE SGAARKAAAT ANIPVINAGD GPGEHPTQAL LDVYTIQSEI GKLDGISVAL 240
  241 VGDLANGRTV RSLAYLLAKF KDVKIYFVSP EIVKMKDDIK DYLTSSGVEW EESSDLMEVA 300
  301 SKCDVVYQTR IQRERFGERL DLYEAARGKY IVDKDLLGVM QKKAIIMHPL PRLDEITADV 360
  361 DADPRAAYFR QAKNGLFIRM ALLKLLLVGW 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 1ml4A
Description: Aspartate carbamoyltransferase catalytic subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ornithine carbamoyltransferase activity 6.04385935444669 bayes_pls_golite062009
carboxyl- or carbamoyltransferase activity 5.32518877756022 bayes_pls_golite062009
aspartate carbamoyltransferase activity 3.84118892938517 bayes_pls_golite062009
catalytic activity 2.06069688716378 bayes_pls_golite062009
carbamoyl-phosphate synthase activity 1.85495044989817 bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 1.84607164910918 bayes_pls_golite062009
transferase activity 1.58523544051826 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 1.54712264845123 bayes_pls_golite062009
dihydroorotase activity 0.585784960037124 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle