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View Structure Prediction Details

Protein: RL182_ARATH
Organism: Arabidopsis thaliana
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL182_ARATH.

Description E-value Query
Range
Subject
Range
RL183_ARATH - 60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1
297.0 [0..1] [187..1]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA  60
   61 PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT ALRFTERARA RIEKAGGECL 120
  121 TFDQLALRAP LGQNTVLLRG P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.30103
Match: 1s1iO
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [142-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNSREAVKHF GPAPGVPHSH SKPYVRAKGR KFEKARGKRK SRGFKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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