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View Structure Prediction Details

Protein: RL4B_ARATH
Organism: Arabidopsis thaliana
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL4B_ARATH.

Description E-value Query
Range
Subject
Range
gi|26450328 - gi|26450328|dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana]
497.0 [0..1] [407..1]

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Predicted Domain #1
Region A:
Residues: [1-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV  60
   61 SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN MCRGGRMFAP TKIWRRWHRR 120
  121 VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI 180
  181 GAYDDAEKAK NSIGIRPGKG KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE 240
  241 RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII 300
  301 NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK 360
  361 LEKKRKVVTK EEAQAIKAAG KAWYQTMISD SDYTEFDNFT KWLGASQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.0
Match: 1s1iD
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle