| Protein: | SYP43_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 331 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP43_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
165.0 | [0..1] | [331..1] |
|
Region A: Residues: [1-331] |
1 11 21 31 41 51
| | | | | |
1 MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN 60
61 RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR ARTKMAELGK AHAKALMPSF 120
121 GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME 180
181 LRKKQSTYLK RLRLQKEDGA DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE 240
241 REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT 300
301 QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
|
| Detection Method: |  |
| Confidence: | 22.045757 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| binding | 2.18404492932496 | bayes_pls_golite062009 |
| protein binding | 1.82422117934251 | bayes_pls_golite062009 |
| phosphatidic acid binding | 1.79882292156155 | bayes_pls_golite062009 |
| protein transporter activity | 1.74973029929612 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| channel activity | 0.0647076360772156 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.0647076360772156 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.0435980899803177 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 0.0336127041418299 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 0.0336127041418299 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00476738027966683 | bayes_pls_golite062009 |
