YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: THN22_ARATH
Organism: Arabidopsis thaliana
Length: 134 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THN22_ARATH.

Description E-value Query
Range
Subject
Range
gi|1076463, gi|8... - gi|802168|gb|AAB33009.1| crambin precursor=thionin variant Thi2Ca10 [Crambe abyssinica, seeds, Pepti...
194.0 [0..1] [134..1]

Back

Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKTVISSL LIMSLVLAQI QVEAKICCPT KDDRSVYFVC MLSVSSQFYC LLKSKCKNTS  60
   61 QTICPPGYTN DILENSGDAV NEYCKLGCAS SVCGALTTLQ NFDTSKVLSE AVEQCTKACS 120
  121 SVCTGGSTAA VKSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.277 a.79.1 Antitermination factor NusB
View Download 0.276 a.24.17 Group V grass pollen allergen
View Download 0.247 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.242 a.81.1 N-terminal domain of DnaB helicase
View Download 0.237 a.39.1 EF-hand


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle