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View Structure Prediction Details

Protein: THN23_ARATH
Organism: Arabidopsis thaliana
Length: 135 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THN23_ARATH.

Description E-value Query
Range
Subject
Range
gi|1076463, gi|8... - gi|802168|gb|AAB33009.1| crambin precursor=thionin variant Thi2Ca10 [Crambe abyssinica, seeds, Pepti...
189.0 [0..1] [134..1]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKTVIFSV LVMGLVISQI QVEAQKTCCP SQSTRKEFED CISEGNLQIL CSAESGCRDT  60
   61 YVGYCPSGFP YGSLTNSGDV VNVYCKLGCV SSLCGALTSL QKLDTSGKVN VAVERCTKAC 120
  121 STICTKGSKT AVETV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.508 a.24.16 Nucleotidyltransferase substrate binding subunit/domain
View Download 0.361 a.90.1 Transcription factor STAT-4 N-domain
View Download 0.359 a.133.1 Phospholipase A2, PLA2
View Download 0.315 d.26.1 FKBP-like
View Download 0.296 a.24.10 Histidine-containing phosphotransfer domain, HPT domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle