YRC Public Data Repository - Protein Structure Prediction

Protein:	TRBP2_ARATH
Organism:	Arabidopsis thaliana
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRBP2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|81661 - gi\|81661\|pir\|\|JQ1073 tryptophan synthase (EC 4.2.1.20) beta-2 chain precursor - Arabidopsis thaliana	507.0	[0..1]	[475..1]
TRPB_CAMAC - Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1	474.0	[0..3]	[475..13]
gi\|57157621 - gi\|57157621\|dbj\|BAD83779.1\| tryptophan synthase beta subunit [Polygonum tinctorium]	474.0	[0..26]	[475..32]
TRPB_TRIEI - Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1	464.0	[0..70]	[474..4]
gi\|69134272, gi\|... - gi\|69299038\|ref\|ZP_00621167.1\| Tryptophan synthase, beta chain [Silicibacter sp. TM1040], gi\|6913427...	461.0	[0..16]	[474..7]
TRPB_THETN - Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1 TRPB_CALS4 - Tryptophan synthase beta chain OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 152...	461.0	[0..82]	[475..1]
TRPB2_NOSS1 - Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 gi\|25291917 - pir\|\|AC2280 tryptophan synthase beta chain [imported] - Nostoc sp. (strain PCC 7120)	460.0	[0..64]	[473..1]
TRPB_PARDP - Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1	460.0	[0..68]	[475..1]
TRPB_PSEF5 - Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 ...	459.0	[0..75]	[474..5]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV  60
   61 MADSEKIKAA GSDPTMWQRP DSFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFGKFGGKYV PETLMHALSE LETAFYSLAT DEDFQRELAE ILKDYVGRES PLYFAERLTE  60
   61 HYRRENGEGP LIYLKREDLN HTGAHKINNA VAQALLAKRL GKKRIIAETG AGQHGVATAT 120
  121 VCARFGLQCI IYMGAQDMER QALNVFRMRL LGAEVRGVHS GTATLKDATS EAIRDWVTNV 180
  181 ETTHYILGSV AGPHPYPMMV RDFHAVIGKE TRKQAMEKWG GKPDVLVACV GGGSNAMGLF 240
  241 HEFVDDTEVR MIGVEAAGFG LDSGKHAATL TKGDVGVLHG AMSYLLQDDD GQIIEPHSIS 300
  301 AGLDYPGVGP EHSFLKDVGR AEYFSVTDEE ALEAFKRVSR LEGIIPALET SHALAHLEKL 360
  361 CPTLPDGARV VLNFSGRGDK DVQTAIKYLE V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	1v8zA
Description:	X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits