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View Structure Prediction Details

Protein: TT16_ARATH
Organism: Arabidopsis thaliana
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TT16_ARATH.

Description E-value Query
Range
Subject
Range
gi|20385584 - gi|20385584|gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera]
240.0 [0..1] [239..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE  60
   61 QNRMPQLIDR YLHTNGLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1tqeP
Description: Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.0368771990474 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [79-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDHHDDQEQ LHHEMELLRR ETCNLELRLR PFHGHDLASI PPNELDGLER QLEHSVLKVR  60
   61 ERKNELMQQQ LENLSRKRRM LEEDNNNMYR WLHEHRAAME FQQAGIDTKP GEYQQFIEQL 120
  121 QCYKPGEYQQ FLEQQQQQPN SVLQLATLPS EIDPTYNLQL AQPNLQNDPT AQND

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.09691
Match: PF01486.8
Description: No description for PF01486.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle