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View Structure Prediction Details

Protein: WRK23_ARATH
Organism: Arabidopsis thaliana
Length: 337 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WRK23_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536889 - gi|21536889|gb|AAM61221.1| putative WRKY-type DNA binding protein [Arabidopsis thaliana]
265.0 [0..1] [337..1]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTDFSKTS FYYPSSQSVW DFGDLAAAER HSLGFMELLS SQQHQDFATV SPHSFLLQTS  60
   61 QPQTQTQPSA KLSSSIIQAP PSEQLVTSKV ESLCSDHLLI NPPATPNSSS ISSASSEALN 120
  121 EEKPKTEDNE EEGGEDQQEK SHTKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [146-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLKAKKNNQK RQREARVAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTTASCN  60
   61 VKKRVERSFR DPSTVVTTYE GQHTHISPLT SRPISTG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.221849
Match: 1wj2A
Description: Solution Structure of the C-terminal WRKY Domain of AtWRKY4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [243-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFFGSSGAAS SLGNGCFGFP IDGSTLISPQ FQQLVQYHHQ QQQQELMSCF GGVNEYLNSH  60
   61 ANEYGDDNRV KKSRVLVKDN GLLQDVVPSH MLKEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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