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View Structure Prediction Details

Protein: SCP52_ARATH
Organism: Arabidopsis thaliana
Length: 184 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP52_ARATH.

Description E-value Query
Range
Subject
Range
SCP7_ARATH - Serine carboxypeptidase-like 7 OS=Arabidopsis thaliana GN=SCPL7 PE=2 SV=1
212.0 [0..17] [184..254]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFSPKLLL LLLLVLRHHA ESGSIVKFLP GFEGPLPFEL ETGYIGIAKY WANDERVREA  60
   61 LQIRKGSIGK WIRCNSNIHY DDDIISSIPY HMNNSINGYR SLIYSGDHDM EVPFLATEAW 120
  121 IRSLNYPIID DWRPWIINNQ IAGYTMTYAN KMTYATIKAS GHTAEYKPAE SFIMFQRWIS 180
  181 GQPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 1bcrB
Description: COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, ANTIPAIN, AND ARGININE AT ROOM TEMPERATURE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle