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View Structure Prediction Details

Protein: gi|119935851, gi...
Organism: Arabidopsis thaliana
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119935851, gi....

Description E-value Query
Range
Subject
Range
gi|18416788, gi|... - gi|21536780|gb|AAM61112.1| sucrase-like protein [Arabidopsis thaliana], gi|18416788|ref|NP_567751.1|...
387.0 [0..1] [412..1]
gi|125540962 - gi|125540962|gb|EAY87357.1| hypothetical protein OsI_08760 [Oryza sativa Indica Group]
gi|125583527, gi... - gi|51964326|ref|XP_506948.1| PREDICTED P0685G12.41 gene product [Oryza sativa (japonica cultivar-gro...
292.0 [0..50] [412..43]
gi|1086252, gi|7... - gi|707001|gb|AAB33256.1| Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum], pir||S5137...
240.0 [0..58] [411..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGRYLDDP LTFTRNPPSS SSPITESSFL AESISRSGSF ESGSLRGGDG DCFSDVDFAL  60
   61 DKLAGTVQFY ERHVFLCYKK PSVWPARIEA SEFDRLPRLL SSVISARKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMKKETLLTI CEGHDGSETS NGDVLIFPDM IRYRRLTHFD VDTFVEEVLV KGVEWLPGNP  60
   61 ESLSSSYVFV CCHGSRDRRC GVCGPSLVSR FREEIDSCGL RGEVSVSPCS HIGGHKYTGD 120
  121 VIIYGLNINQ RVTGHWYGCV TLEDVPLLLE QHINKGEIVD RLWRGEMGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 2fug2
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [279-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEEDQKKTQE QRLQLNSEKI SNREVTQESV NNSICCQSRA VPELNGSGCQ QNGNSSYCLE  60
   61 EIHTEKNTSE RVTSVKNASL RIGSSENGSS GGFKVCAVMS MWLETWERED TYAALAVACA 120
  121 AASVAIAYNC YKQLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle