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View Structure Prediction Details

Protein: ARAK_ARATH
Organism: Arabidopsis thaliana
Length: 1039 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ARAK_ARATH.

Predicted Domain #1
Region A:
Residues: [1-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERAKLQKK KKVTEDLLDS LLLLPPWRNF AISQSHQSII ESSSQRLPEK MRIDENEGVS  60
   61 ASSKHLVFAY YVTGHGFGHA TRVVEVVRHL IAAGHDVHVV TGAPDFVFTS EIQSPRLKIR 120
  121 KVLLDCGAVQ ADALTVDRLA SLEKYVETAV VPRAEILETE VEWLHSIKAD FVVSDVVPVA 180
  181 CRAAADAGIR SVCVTNFSWD FIYAEYVMAA GYHHRSIVWQ IAEDYSHCEF LIRLPGYCPM 240
  241 PAFRDVIDVP LVVRRLHKSR KEVRKELGIA EDVNVVILNF GGQPSGWNLK ETSLPTGWLC 300
  301 LVCGASETLE LPPNFIKLAK DAYTPDIIAA SDCMLGKIGY GTVSEALSYK VPFVFVRRDY 360
  361 FNEEPFLRNM LEFYQCGVEM IRRDLLMGQW TPYLERAVSL KPCYEGGING GEIAAHILQE 420
  421 TAIGRHCASD KLSGARR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.39794
Match: 1f0kA
Description: Peptidoglycan biosynthesys glycosyltransferase MurG
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [438-1039]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRDAIILGYQ LQRVPGRDIA IPEWYSRAEN ELGQSAGSSP TVQANENNSL VESCIDDFDI  60
   61 LQGDVQGLSD TCTFLKSLAM LDAIHDSEKS TEKKTVRERK AAGGLFNWEE EIFVARAPGR 120
  121 LDVMGGIADY SGSLVLQMPI REACHVAVQR NLPGKHRLWK HAQARQQAKG QVPTPVLQIV 180
  181 SYGSEISNRA PTFDMDLSDF MDGDEPISYE KARKFFAQDP AQKWAAYVAG TILVLMIELG 240
  241 VRFEDSISLL VSSAVPEGKG VSSSAAVEVA SMSAIAAAHG LSIDPRDLAI LCQKVENHIV 300
  301 GAPCGVMDQM TSSCGEANKL LAMICQPAEV VGLVEIPNHV RFWGIDSGIR HSVGGADYRS 360
  361 VRVGAYMGRK MIKSMASSIL SPSASSANGG NPEELEDEGI DLLEAEASLD YLCNLSPHRY 420
  421 EARYADKLPD IMLGQTFIEE YADHDDPVTV IDQKRSYSVK APARHPIYEN FRVKTFKALL 480
  481 TSATSDEQLT ALGGLLYQCH YSYSACGLGS DGTNRLVQLV QGMQHNKSNS EDGTLYGAKI 540
  541 TGGGSGGTVC VVGRNSLRSS QQILEIQQRY KAATGYLPLI FEGSSPGAGK FGYLRIRRRI 600
  601 SL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.09691
Match: 2a2cA
Description: x-ray structure of human N-acetyl galactosamine kinase complexed with Mg-ADP and N-acetyl galactosamine 1-phosphate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle