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View Structure Prediction Details

Protein: gi|21436007, gi|...
Organism: Arabidopsis thaliana
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21436007, gi|....

Description E-value Query
Range
Subject
Range
gi|7486978, gi|7... - pir||T10648 hypothetical protein T13K14.220 - Arabidopsis thaliana, gi|7268903|emb|CAB79106.1| putat...
79.0 [0..1] [39..1]
gi|92891726 - gi|92891726|gb|ABE90938.1| conserved hypothetical protein [Medicago truncatula]
54.0 [0..1] [43..1]
gi|49389258, gi|... - gi|50905425|ref|XP_464201.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|49389...
48.0 [0..7] [40..8]
gi|102139790 - gi|102139790|gb|ABF69975.1| hypothetical protein MA4_106O17.12 [Musa acuminata]
47.0 [0..6] [39..8]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSRLARFI TEVAPPQFVT VMRRRTAKVL DTIKEEEREV GTDSIFPSSF NSKKISSPFT  60
   61 SPYSSSVSSA SASASCTSGL NKFPVTENRG SFPVFKN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.348 g.36.1 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
View Download 0.308 a.118.9 ENTH/VHS domain
View Download 0.261 c.126.1 Description not found.
View Download 0.247 a.150.1 Anti-sigma factor AsiA
View Download 0.226 d.220.1 Metal cation-transporting ATPase, ATP-binding domain N
View Download 0.217 a.29.2 Bromodomain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle