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View Structure Prediction Details

Protein: HPSE1_ARATH
Organism: Arabidopsis thaliana
Length: 543 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPSE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|11357400, gi|... - gi|6562297|emb|CAB62595.1| putative protein [Arabidopsis thaliana], pir||T45608 hypothetical protein...
430.0 [0..23] [543..1]

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Predicted Domain #1
Region A:
Residues: [1-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFRVCVIVV FLGCLLLVPE KTMAQEMKRA SIVIQGARRV CETDENFVCA TLDWWPHDKC  60
   61 NYDQCPWGYS SVINMDLTRP LLTKAIKAFK PLRIRIGGSL QDQVIYDVGN LKTPCRPFQK 120
  121 MNSGLFGFSK GCLHMKRWDE LNSFLTATGA VVTFGLNALR GRHKLRGKAW GGAWDHINTQ 180
  181 DFLNYTVSKG YVIDSWEFGN ELSGSGVGAS VSAELYGKDL IVLKDVINKV YKNSWLHKPI 240
  241 LVAPGGFYEQ QWYTKLLEIS GPSVVDVVTH HIYNLGSGND PALVKKIMDP SYLSQVSKTF 300
  301 KDVNQTIQEH GPWASPWVGE SGGAYNSGGR HVSDTFIDSF WYLDQLGMSA RHNTKVYCRQ 360
  361 TLVGGFYGLL EKGTFVPNPD YYSALLWHRL MGKGVLAVQT DGPPQLRVYA HCSKGRAGVT 420
  421 LLLINLSNQS DFTVSVSNGI NVVLNAESRK KKSLLDTLKR PFSWIGSKAS DGYLNREEYH 480
  481 LTPENGVLRS KTMVLNGKSL KPTATGDIPS LEPVLRSVNS PLNVLPLSMS FIVLPNFDAS 540
  541 ACS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.0
Match: 1pz3A
Description: Crystal structure of a family 51 (GH51) alpha-L-arabinofuranosidase from Geobacillus stearothermophilus T6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on glycosyl bonds 1.61018593762156 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 1.5392176137631 bayes_pls_golite062009
hydrolase activity 1.17820019875476 bayes_pls_golite062009
catalytic activity 0.95519213931595 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle