| Protein: | CTF64_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 461 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF64_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..1] | [435..183] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE 60
61 ETALSARRNL QSYEINGRQL RVDFAENDKG T
|
| Detection Method: |  |
| Confidence: | 24.0 |
| Match: | 1p1tA |
| Description: | NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86761524461453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.984778969024386 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
|
Region A: Residues: [92-266] |
1 11 21 31 41 51
| | | | | |
1 DKTRDQSQGG PGLPSTTTVT ESQKQIGGPV DSNMHQPVGL HLATTAASVI AGALGGPQVG 60
61 SQFTQSNLQV PASDPLALHL AKMSRSQLTE IISSIKLMAT QNKEHARQLL VSRPQLLKAV 120
121 FLAQVMLGIV SPQVLQSPNI VQAPSHMTGS SIQDAQLSGQ NLLPPLAQRS QQLSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [267-461] |
1 11 21 31 41 51
| | | | | |
1 APHSQYPVQQ SSKQPFSQIP QLVAQPGPSS VNPPPRSQVK VENAPFQRQQ VVPASTNIGY 60
61 SSQNSVPNNA IQPSQVPHQA LPNSVMQQGG QTVSLNFGKR INEGPPHQSM NRPSKMMKVE 120
121 DRRTTSLPGG HVSNSMLPNQ AQAPQTHISP DVQSTLLQQV MNLTPEQLRL LTPEQQQEVL 180
181 KLQQALKQDH MMQPS
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.985281368149008 | bayes_pls_golite062009 |
| protein binding | 0.160528696920916 | bayes_pls_golite062009 |
