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View Structure Prediction Details

Protein: gi|42568678, gi|...
Organism: Arabidopsis thaliana
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568678, gi|....

Description E-value Query
Range
Subject
Range
gi|68355286 - gi|68355286|ref|XP_685556.1| PREDICTED: similar to hect domain and RLD 4 (predicted) [Danio rerio]
397.0 [0..7] [445..104]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ  60
   61 LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS SFRIGISCGL FHSGLTIDGD 120
  121 LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG 180
  181 FGALGHKVYT RELVPRRVDD SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG 240
  241 PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL 300
  301 GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI 360
  361 EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV PGLPEIQTTP VEVNFLTEED 420
  421 ECQPHKVISI SIGASHALCL VSRSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.69897
Match: 1a12A
Description: Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle