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View Structure Prediction Details

Protein: gi|25370541, gi|...
Organism: Arabidopsis thaliana
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25370541, gi|....

Description E-value Query
Range
Subject
Range
gi|240254452, gi... - gi|4432796|gb|AAD20648.1| putative VSF-1-like b-ZIP transcription factor [Arabidopsis thaliana], pir...
107.0 [0..1] [262..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSDNITTP SGSRSMTQPS LASSSLPPLS PSSSTFRRNS LPSMSFSPSA PVESRDSSIK  60
   61 VNKNPSLPPL VDGEEDASWL EFGSSDYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDELNKIAKS TKLQDIAKST KLQEIVSDPK KVRRILKNRE LAASSKQRKL KYMIDLEHRI  60
   61 KFLENKNALI FEKIKLLEKD KTILMNEKKE ITIQIESLEQ QAQLRDALTE KLHVEIERLK 120
  121 VITISNEKGS VELQRLKMET CEVLQYRREF DRSNMQGMDP NMFTWSQPNL GFYGQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle