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View Structure Prediction Details

Protein: gi|18399721, gi|...
Organism: Arabidopsis thaliana
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399721, gi|....

Description E-value Query
Range
Subject
Range
gi|21536975 - gi|21536975|gb|AAM61316.1| unknown [Arabidopsis thaliana]
472.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTEAISLT KRGMLPPSSC NSLMDRSESL KRDSVMGNGA AKVRGSLERK KSKSFKEGDS  60
   61 YSSWLITEAP GSIAAVRREQ VAAQQALRKL KIAHYGRSKS TINFTSSKVV PLLNPNPNPH 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQRCSFLTPT SDPIYVAYHD EEWGVPVHDD KTLFELLTLS GAQVGSDWTS TLRKRHDYRK  60
   61 AFMEFEAEVV AKLTEKEMNA ISIEYKIEMS KVRGVVENAK KIVEIKKAFV SLEKYLWGFV 120
  121 NHKPISTNYK LGHKIPVKTS KSESISKDMV RRGFRFVGPT VVHSFMQAAG LTNDHLITCC 180
  181 RHAPCTLLAT NP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle