YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18398731, gi|...
Organism: Arabidopsis thaliana
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18398731, gi|....

Description E-value Query
Range
Subject
Range
RL6_HALHL - 50S ribosomal protein L6 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplF PE=3 SV=1
150.0 [0..1] [101..79]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKFFRFLK IVGVGYKARA EEAGRFLYLK LGYSHEVELA VPPAVRVFCF KNNVVCCTGI  60
   61 DKQRVHQFAA TVRSCKPPEP YKGKGIMYTD EVVKKKQGKK SK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1vs6G
Description: No description for 1vs6G was found.

Predicted functions:

Term Confidence Notes
structural molecule activity 0.60049379389751 bayes_pls_golite062009
structural constituent of ribosome 0.59110974995706 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle