YRC Public Data Repository - Protein Structure Prediction

Protein:	RUS2_ARATH
Organism:	Arabidopsis thaliana
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RUS2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|116310213 - gi\|116310213\|emb\|CAH67223.1\| OSIGBa0145M07.5 [Oryza sativa (indica cultivar-group)] gi\|115459438, gi... - gi\|215697660\|dbj\|BAG91654.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115459438\|ref...	483.0	[0..15]	[433..12]
CP058_PONPY - UPF0420 protein C16orf58 homolog - Pongo pygmaeus (Orangutan) RUS1_PONAB - RUS1 family protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1	476.0	[0..35]	[433..43]
gi\|114662190 - gi\|114662190\|ref\|XP_001159530.1\| PREDICTED: hypothetical protein [Pan troglodytes]	473.0	[0..35]	[433..43]
gi\|109128357 - gi\|109128357\|ref\|XP_001113355.1\| PREDICTED: similar to CG10338-PA [Macaca mulatta]	472.0	[0..35]	[433..43]
C16orf58 - chromosome 16 open reading frame 58	470.0	[0..35]	[433..43]
gi\|157113953, gi... - gi\|157113953\|ref\|XP_001652155.1\| hypothetical protein AaeL_AAEL006646 [Aedes aegypti], gi\|108877519\|...	451.0	[0..43]	[433..25]
gi\|73958296 - gi\|73958296\|ref\|XP_547054.2\| PREDICTED: similar to CG10338-PA [Canis familiaris]	450.0	[0..64]	[433..87]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLQEKVKL IKKEDPVMLK SPEDFPVYWF ETSDSVSHRY QFQSDGHLSM KVVDDARPVP  60
   61 QKMVESFLNK FFPSGYPYSV NEGYLRYTQF RALQHFSSAA LSVLSTQSLL FAAGLRPTPA 120
  121 QATVVSWILK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.873	N/A	N/A	d.20.1	UBC-like

Predicted Domain #2

Region A:
Residues: [131-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGMQHVGKLI CSNLGARMDS EPKRWRILAD VLYDLGTGLE LVSPLCPHLF LEMAGLGNFA  60
   61 KGMATVAARA TRLPIYSSFA KEGNLSDIFA KGEAISTLFN VAGIGAGIQL ASTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.922	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

Predicted Domain #3

Region A:
Residues: [245-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSSMEGKLVV GSILSVVHVY SVVEQMRGVP INTLNPQRTA LIVANFLKTG KVPSPPDLRF  60
   61 QEDLMFPERP IQDAGNVKVG RALHKAVKPS EVQRLKQVFV EEKFLLSHGK SWTDMVLEHD 120
  121 ATGEDALRGW LVAAYVKSMT KIYNDPDDII LQDAYDKMND VFNPFLSQVQ AKGWYTDRFL 180
  181 DGTGTRFAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits