YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15292789, gi\|...
Organism:	Arabidopsis thaliana
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15292789, gi|....

Description	E-value	Query Range	Subject Range
gi\|215740796, gi... - gi\|57900163\|dbj\|BAD88248.1\| putative UMP-kinase [Oryza sativa Japonica Group], gi\|222619931\|gb\|EEE56...	282.0	[0..16]	[335..15]
PYRH_CARHZ - Uridylate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=p...	266.0	[0..92]	[332..2]
gi\|42572477 - gi\|42572477\|ref\|NP_974334.1\| uridylate kinase [Arabidopsis thaliana]	264.0	[0..1]	[302..1]
PYRH_COLP3 - Uridylate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=pyrH PE=3 SV=1	261.0	[0..88]	[331..1]
PYRH_PSEA6 - Uridylate kinase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=pyrH PE=3 SV=1	261.0	[0..88]	[334..1]
gi\|89048834, gi\|... - gi\|89075418\|ref\|ZP_01161835.1\| uridylate kinase [Photobacterium sp. SKA34], gi\|89048834\|gb\|EAR54404.... gi\|88813751, gi\|... - gi\|88813751\|ref\|ZP_01128969.1\| uridylate kinase [Nitrococcus mobilis Nb-231], gi\|88788995\|gb\|EAR2014...	260.0	[0..88]	[329..1]
gi\|90437851, gi\|... - gi\|90580973\|ref\|ZP_01236774.1\| uridylate kinase [Vibrio angustum S14], gi\|90437851\|gb\|EAS63041.1\| ur...	259.0	[0..88]	[329..1]
gi\|77963173, gi\|... - gi\|77963173\|ref\|ZP_00826985.1\| COG0528: Uridylate kinase [Yersinia mollaretii ATCC 43969], gi\|238796...	257.0	[0..88]	[336..1]
PYRH_SYNJB - Uridylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=pyrH PE=3 SV=1 gi\|86609733, gi\|... - gi\|86609733\|ref\|YP_478495.1\| uridylate kinase [Cyanobacteria bacterium Yellowstone B-Prime], gi\|8655...	256.0	[0..94]	[327..1]
PYRH_SHELP - Uridylate kinase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=pyrH PE=3 SV=1	256.0	[0..88]	[332..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPLPLTSC SPISTSSSIS RTSFVPLTLR NRTFFSNQNY SRRVLISCSS SLSSDNGSSP  60
   61 DSMNGNGNGN GSSLNGQSSF PRLPSFDGTS KPPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.470	b.55.1	PH domain-like
View	Download	0.441	d.129.1	TATA-box binding protein-like
View	Download	0.346	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.346	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.346	b.55.1	PH domain-like
View	Download	0.346	b.55.1	PH domain-like
View	Download	0.319	c.151.1	Description not found.
View	Download	0.314	d.141.1	Ribosomal protein L6
View	Download	0.308	a.29.4	RecG, N-terminal domain
View	Download	0.285	b.1.1	Immunoglobulin

Predicted Domain #2

Region A:
Residues: [95-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KWRRVLLKVS GEALAGDEEQ NIDPKVTMAI AREVAAVTRL GIEVAIVVGG GNIFRGSTWA  60
   61 GCSGLDRSSA DYIGMLATVM NAIFLQATME SIGIPTRVQT AFRMSEVAEP YIRRRAIRHL 120
  121 EKGRVVIFAA GTGNPFFTTD TAAALRCAEI NAEVVLKATN VDGVFDDDPK RNPNARLLDS 180
  181 LTYQEVTSKD LSVMDMTAIT LCQENNIPVV VFNLSEPGNI AKAIKGERVG TLIGGTWNSI 240
  241 VTTTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	2bneA
Description:	The structure of E. coli UMP kinase in complex with UMP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits