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View Structure Prediction Details

Protein: gi|38566634, gi|...
Organism: Arabidopsis thaliana
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38566634, gi|....

Description E-value Query
Range
Subject
Range
gi|4092885, gi|7... - pir||T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi|4092885|...
159.0 [0..4] [98..1439]
gi|88011142, gi|... - gi|88011142|gb|ABD38908.1| At1g43790 [Arabidopsis thaliana], gi|21592549|gb|AAM64498.1| unknown [Ara...
149.0 [0..79] [176..4]
gi|73955463 - gi|73955463|ref|XP_858293.1| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...
148.0 [0..3] [96..1615]
gi|76635636 - gi|76635636|ref|XP_881215.1| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...
147.0 [0..3] [96..1704]
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
146.0 [0..3] [96..1685]
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
146.0 [0..3] [96..1678]
gi|40746483, gi|... - gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
146.0 [0..3] [96..1608]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVEYFPY YSPPSHQHPL PSPVPPPPSH ISPPPPPFSP PHHPPPPHFS PPHQPPPSPY  60
   61 PHPHPPPPSP YPHPHQPPPP PHV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPPPPTPAP GHHVIIVVVI SLGSLFFLAF LAAALFCYLK KRRKSSTKAE IIEFDEHLKV  60
   61 QETIVQGPHG EQTRVVMLEE DIHLVEDIHK TEKLSRPSHL SSTGRHAIDI SDPNHHFTEQ 120
  121 KS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle