YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|6466942, gi|1...
Organism: Arabidopsis thaliana
Length: 114 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6466942, gi|1....

Description E-value Query
Range
Subject
Range
gi|50732862 - gi|50732862|ref|XP_418799.1| PREDICTED: similar to KIAA0851 protein [Gallus gallus]
113.0 [0..5] [94..652]

Back

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL NNETVSIELK NGTVVHGTIT GVDVSMNTHL KTVKMSLKGK NPVTLDHLSL  60
   61 RGNNIRYYIL PDSLNLETLL VEDTPRVKPK KPVAGKAVGR GRGRGRGRGR GRGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 1b34A
Description: D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle