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View Structure Prediction Details

Protein: CHX14_ARATH
Organism: Arabidopsis thaliana
Length: 829 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX14_ARATH.

Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLDLEEVN SMQRGKVHGP FLVENMVCQK NHMLTSKGVF LGSDPLKYAM PLMLLQMSVI  60
   61 IITSRLLYRL LKPLKQGMIS AQVLAGIILG PSLF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQSSAYMQMF LPISGKITLQ TLSNLGFFIH LFLLGLRIDA SIIRKAGSKA ILIGTASYAL  60
   61 PFSLGNLTVL FLKNTYNLPP DVVHCISTVI SLNAMTSFPV TTTVLAELNI LNSDLGRLAT 120
  121 NCSIVCEAFS WIVALVFRMF LRDGTLASVW SFVWVTALIL VIFFVCRPAI IWLTERRSIS 180
  181 IDKAGEIPFF PIIMVLLTIS LTSEVLGVHA AFGAFWLGVS LPDGPPLGTG LTTKLEMFAT 240
  241 SLMLPCFISI SGLQTNFFII GESHVKIIEA VILITYGCKF LGTAAASAYC NIQIGDAFSL 300
  301 ALLMCCQGVI EIYTCVMWKD EKVLNTECFN LLIITLLLVT GISRFLVVCL YDPSKRYRSK 360
  361 SKRTILDTRQ R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [466-829]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLQFRLLLCV YNVENVPSMV NLLEASYPSR FSPISVFTLH LVELKGRAHA VLVPHHQMNK  60
   61 LDPNTVQSTH IVNGFQRFEQ QNQGTLMAQH FTAAAPFSSI NDDICTLALD KKATLIVIPF 120
  121 HKQYAIDGTV DHVNPSIRNI NLNVLEKAPC SVGIFIDRGE TEGRRSVLMS YTWRNVAVIF 180
  181 IEGRDDAEAL AFSMRIAEHP EVSVTMIHFR HKSSLQQNHV VDVESELAES YLINDFKNFA 240
  241 MSKPKISYRE EIVRDGVETT QVISSLGDSF DLVVVGRDHD LESSVLYGLT DWSECPELGV 300
  301 IGDMFASSDF HFSVLVIHQQ EGDSLAMDNS YKLPASPHRV GDPRVHPRFS VEEGFTSVDL 360
  361 HSNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.221849
Match: 2jaxA
Description: No description for 2jaxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle