YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TCX6_ARATH
Organism: Arabidopsis thaliana
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCX6_ARATH.

Description E-value Query
Range
Subject
Range
gi|30680884 - gi|30680884|ref|NP_849995.1| tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]
672.0 [0..1] [571..1]
gi|92874527 - gi|92874527|gb|ABE82782.1| Tesmin/TSO1-like, CXC [Medicago truncatula]
507.0 [0..19] [557..43]
gi|115440083, gi... - gi|57900356|dbj|BAD87346.1| tesmin-like [Oryza sativa Japonica Group], gi|215768567|dbj|BAH00796.1| ...
482.0 [0..18] [512..26]

Back

Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV  60
   61 TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP NSMPRPAGET RDGTPQKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [153-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVENEPARRQ AVESTLERNP NAFRPKIAAS PHGGRDNREE VGDVVMLARH NKGCHCKKSG  60
   61 CLKKYCECFQ ANILCSENCK CLDCKNFEGS EVRQSLFHGE HSHNLAYLQH ANAAITGAIG 120
  121 SSGFASAPPP KRRKGQEIFF NQGTKDSSTH RLGQANNGRT TSSQTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [319-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRAGGNASLG PSKVVYKSLL ANIIKPMDVK ALCSVLVAVA GEAAKTLTEK RLANQKETSV  60
   61 ASSVQDQGHV NNKAEKSGLE DSNADGSKGR SLSPETLALM CDERDTMLMV AASPNCSVEP 120
  121 TSQLPNGQDQ VYAEQEKVVL TKFRDCLNRI ISCGEVKESN CSMSRMD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [486-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDTPVQTTVR IDPVVQQAPV ANGVSQTAKQ PSQLNTTTPN TSSQTANGVS QTAKQPSQLT  60
   61 TTTTTPNTSS QTHLHKTPAL SEKKDL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle